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fa39f64505 |
40
Replace-Curses-mvprintw-with-va_list-based-equivalen.patch
Normal file
40
Replace-Curses-mvprintw-with-va_list-based-equivalen.patch
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@ -0,0 +1,40 @@
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From e9e8dd148b9454abb5a7704d6f6249f7aa7aeded Mon Sep 17 00:00:00 2001
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From: herengui <herengui@uniontech.com>
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Date: Thu, 10 Mar 2022 18:14:43 +0800
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Subject: [PATCH] Replace Curses mvprintw() with va_list-based equivalent
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Instead of allocating a buffer for the formatted string and printing
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it with mvprintw() -- which should have a "%s" format argument to guard
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against '%' characters in the formatted string, hat tip Andreas Tille --,
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use vw_printw() which takes a va_list so can do the formatting itself.
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Signed-off-by: herengui <herengui@uniontech.com>
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---
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bam_tview_curses.c | 8 ++------
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1 file changed, 2 insertions(+), 6 deletions(-)
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diff --git a/bam_tview_curses.c b/bam_tview_curses.c
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index 11db0da..37fb033 100644
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--- a/bam_tview_curses.c
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+++ b/bam_tview_curses.c
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@@ -78,15 +78,11 @@ static void curses_destroy(tview_t* base) {
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*/
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static void curses_mvprintw(struct AbstractTview* tv,int y ,int x,const char* fmt,...) {
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- unsigned int size=tv->mcol+2;
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- char* str=malloc(size);
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- if(str==0) exit(EXIT_FAILURE);
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va_list argptr;
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va_start(argptr, fmt);
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- vsnprintf(str,size, fmt, argptr);
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+ if (wmove(stdscr, y, x) != ERR)
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+ vw_printw(stdscr, fmt, argptr);
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va_end(argptr);
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- mvprintw(y,x,str);
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- free(str);
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}
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static void curses_mvaddch(struct AbstractTview* tv,int y,int x,int ch) {
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--
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2.20.1
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BIN
samtools-1.12.tar.bz2
Normal file
BIN
samtools-1.12.tar.bz2
Normal file
Binary file not shown.
77
samtools.spec
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77
samtools.spec
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Name: samtools
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Version: 1.12
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Release: 5
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Summary: Tools (written in C using htslib) for manipulating next-generation sequencing data
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License: MIT and BSD
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URL: http://www.htslib.org
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Source0: https://github.com/samtools/samtools/archive/%{name}-%{version}.tar.bz2
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Patch0: Replace-Curses-mvprintw-with-va_list-based-equivalen.patch
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BuildRequires: gcc autoconf automake make zlib-devel htslib-devel ncurses-devel bzip2-devel xz-devel
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%description
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The original samtools package has been split into three separate but tightly coordinated projects:
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htslib: C-library for handling high-throughput sequencing data
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samtools: mpileup and other tools for handling SAM, BAM, CRAM
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bcftools: calling and other tools for handling VCF, BCF
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See also http://github.com/samtools/
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%package devel
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Summary: Header files and libraries for compiling against %{name}
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Group: Development/Libraries
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Requires: %{name} = %{version}-%{release}
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%description devel
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Header files and libraries for compiling against %{name}
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%prep
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%autosetup -p1
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%build
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autoheader
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autoconf -Wno-syntax
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%configure --prefix=%{_prefix} --libdir=%{_libdir} --with-htslib
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%make_build
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%install
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%make_install
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install -d -m 0755 %{buildroot}%{_includedir}/bam
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install -p -m 0644 *.h %{buildroot}%{_includedir}/bam
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install -D -p -m 0755 libbam.a %{buildroot}%{_libdir}/libbam.a
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%pre
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%preun
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%post
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%postun
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%check
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%files
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%license LICENSE
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%doc README INSTALL doc/ examples/
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%{_bindir}/*
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%{_mandir}/*
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%files devel
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%defattr(-,root,root,-)
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%{_includedir}/bam
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%{_libdir}/libbam.a
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%changelog
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* Thu Mar 10 2022 herengui <herengui@uniontech.com> - 1.12-5
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- fix build error
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* Tue Feb 08 2022 herengui <herengui@uniontech.com> - 1.12-4
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- rebuild for htslib version updated.
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* Tue Jul 20 2021 herengui <herengui@uniontech.com> - 1.12-3
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- remove useless buildrequires.
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- replace tab with space
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* Thu Mar 25 2021 herengui <herengui@uniontech.com> - 1.12-2
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- Add devel package
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* Thu Mar 18 2021 yangzhao <yangzhao1@kylinos.cn> - 1.12-1
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- Package init
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