!8 update to 1.11, new version fixed CVE-2020-36403

Merge pull request !8 from 莫得感情的打包机器人/openEuler-20.03-LTS-SP3

htslib.spec

@@ -1,63 +1,99 @@
-#%global debug_package %{nil}
-
 Name:    htslib
-Version: 1.10.2
+Version: 1.11
 Release: 1
 Summary: C library for high-throughput sequencing data formats
 License: MIT and BSD
 URL:	 http://www.htslib.org
-Source0: https://github.com/samtools/htslib/archive/%{name}-%{version}.tar.gz
+Source0: https://github.com/samtools/htslib/archive/refs/tags/%{version}.tar.gz#/%{name}-%{version}.tar.gz
 
-BuildRequires: 	gcc autoconf automake  make curl-devel zlib-devel bzip2-devel
+BuildRequires: 	gcc autoconf automake make curl-devel zlib-devel bzip2-devel xz-devel libxcrypt-devel openssl-devel
 
 %description
-HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
-HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
-
+HTSlib is an implementation of a unified C library for accessing common file 
+formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, 
+and is the core library used by samtools and bcftools. HTSlib only depends on 
+zlib. It is known to be compatible with gcc, g++ and clang.
+HTSlib implements a generalized BAM index, with file extension .csi (
+coordinate-sorted index). The HTSlib file reader first looks for the new index
+and then for the old if the new index is absent.
 
 %package devel
 Summary: libs for htslib package 
 Requires: %{name} = %{version}-%{release}
+
 %description devel
-HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
-HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
+The %{name}-devel package contains libraries and header files for
+developing applications that use %{name}.
+
+%package tools
+Summary: Additional htslib-based tools
+Requires: %{name} = %{version}-%{release}
+
+%description tools
+Includes the popular tabix indexer, which indexes both .tbi and .csi formats,
+the htsfile identifier tool, and the bgzip compression utility.
 
 
 %prep
-%setup -q -n %{name}-%{version}/
+%setup -q -n %{name}-%{version}
 
 %build
 autoheader
 autoconf
-%configure --prefix=%{_prefix} --libdir=%{_libdir} --enable-gcs --enable-libcurl --enable-s3  
+%configure --prefix=%{_prefix} \
+    --libdir=%{_libdir} \
+    --enable-plugins \
+    --enable-gcs \
+    --enable-libcurl \
+    --enable-s3
 %make_build
+# As we don't install libhts.a, the .private keywords are irrelevant.
+sed -i -E '/^(Libs|Requires)\.private:/d' htslib.pc.tmp
 
 %install
 %make_install
+# The dynamic libraries should have execution permissions, otherwise it cannot be referenced by other packages
+find %{buildroot}/%{_libdir} -iname "*.so.*" -exec chmod +x {} \;
 rm -rf %{buildroot}/%{_libdir}/libhts.a
 
-%pre
-%preun
-%post
-%postun
-
-%check
-
 %files
 %license LICENSE 
 %doc README NEWS README.large_positions.md
-%{_bindir}/*
 %{_libdir}/libhts.so.*
-%{_mandir}/*
-
+%dir %{_libexecdir}/%{name}
+%{_libexecdir}/%{name}/hfile_gcs.so
+%{_libexecdir}/%{name}/hfile_libcurl.so
+%{_libexecdir}/%{name}/hfile_s3.so
+%{_libexecdir}/%{name}/hfile_s3_write.so
+%{_mandir}/man5/faidx.5*
+%{_mandir}/man5/sam.5*
+%{_mandir}/man5/vcf.5*
+%{_mandir}/man7/htslib-s3-plugin.7*
 
 %files devel
+%dir %{_includedir}/%{name}
+%{_includedir}/%{name}/*
 %{_libdir}/libhts.so
-%{_libdir}/pkgconfig/*
-%{_includedir}/*
+%{_libdir}/pkgconfig/htslib.pc
 
+%files tools
+%{_bindir}/bgzip
+%{_bindir}/htsfile
+%{_bindir}/tabix
+%{_mandir}/man1/bgzip.1*
+%{_mandir}/man1/htsfile.1*
+%{_mandir}/man1/tabix.1*
 
 %changelog
-* Sun Mar 29 2020 Wei Xiong <myeuler@163.com>
+* Tue Feb 08 2022 herengui <herengui@uniontech.com> - 1.11-1
+- update to 1.11, new version fixed CVE-2020-36403
+
+* Wed Jun 16 2021 zhao yang <yangzhao1@kylinos.cn> - 1.10.2-3
+- Add htslib-tools package
+
+* Fri Mar 26 2021 herengui <herengui@uniontech.com> - 1.10.2-2
+- Add compilation parameters, update package lists
+
+* Sun Mar 29 2020 Wei Xiong <myeuler@163.com> - 1.10.2-1
 - Package init